PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000518.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 928aa    MW: 104242 Da    PI: 7.0165
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000518.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11604.5e-50301463118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e ++rwl+++ei+a+L n++ +++  ++ + p sg++++++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++ ptf rrcy
  CCG000518.1  30 EEsRTRWLRPNEIHAMLCNHKYFTINVKPVNLPMSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDIPTFVRRCY 127
                  4459********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  wlL+++le+ivlvhy+e++
  CCG000518.1 128 WLLDKTLEHIVLVHYRETQ 146
                  ****************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.99325151IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7328146IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4432144IPR005559CG-1 DNA-binding domain
PfamPF018331.2E-6378464IPR002909IPT domain
SuperFamilySSF812962.17E-14379465IPR014756Immunoglobulin E-set
PfamPF127962.8E-7563643IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.8E-16563676IPR020683Ankyrin repeat-containing domain
CDDcd002041.06E-15563673No hitNo description
SuperFamilySSF484032.8E-17564676IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.459581646IPR020683Ankyrin repeat-containing domain
SMARTSM002481.2E-6614643IPR002110Ankyrin repeat
PROSITE profilePS5008811.915614646IPR002110Ankyrin repeat
SuperFamilySSF525401.51E-6725828IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001525777799IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.76778807IPR000048IQ motif, EF-hand binding site
SMARTSM000155.4E-4800822IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.109801825IPR000048IQ motif, EF-hand binding site
PfamPF006123.5E-4802822IPR000048IQ motif, EF-hand binding site
SMARTSM0001519880902IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078882910IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MESGYSDRLV GSEIHGFHTL QDLDVPSIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVN  60
LPMSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGQDIP  120
TFVRRCYWLL DKTLEHIVLV HYRETQELQG SPATPVNSHS SSVSDQSAPG LLSEESDSGA  180
ARGYYAGEKD LGPSDSLTVI NHAMRLHELN TLEWDDLLTN DPGNSILHGG DKIPSFDQQN  240
QIAVKGSVND GSTLSGYQLS AEKSALGNLT EAVVRNGNTQ FSGPDNVYRQ LTTDSQEYLD  300
AQRKNSVVLG AGDSLDILIN DGLQSQDSFG RWMNSIIDDS PVSVDDAVVE SSISSGYDSF  360
ASPGMDQHQS SIQEQMFIIT DFSPAWGFSN ETTKILVTGY FHEQYLHLAK SNLFCICGDA  420
FVPAEIVQAG VYSCMVSPHS PGLVNLCLSL DGSKPISQIL NFEYRAPLVH DSVVFSEVKS  480
KWEEFHLQMR LAYLLFSTSK TLNVLSSKVS PAKLKEAKKF AHRTSNISNS WAYLIKSIED  540
NRISVAQAKD GLFELSLKNT IKEWLLERVL EGCKTTEYDA QGLGVIHLCA IIGYTWAVYL  600
FSWSGLSLDF RDKHGWTALH WAAYYGREKM VAALLSAGAK PNLVTDPTKE NPGGCTAADL  660
ASAKGYDGLA AYLSEKALVA QFESMIIAGN ASGSLQTTAT DTVNSENLSE EELHLKDTLA  720
AYRTAADAAA RIQAAFREHS LKVYTKAVQS SSPEDEARNI IAAMKIQHAF RNYESKKKMA  780
AAAHIQHRFR TWKMRKNFLN MRRQAIKIQA AFRGFQVRKQ YRKIIWSVGL LEKAILRWRL  840
KRKGFRGLQV EPVETDVDPK HESDKEEDFY KISQKQAGER VERSVIRVQA MFRSKQAQEQ  900
YRRMKLTYNQ ATVEYEGLLD TDMVEGDL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2081390.0AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020359.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X3
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLB9HIR20.0B9HIR2_POPTR; Calmodulin-binding family protein
STRINGPOPTR_0008s10730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators